3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13371

Details:

PFam ID : PF13371

PFam Domain Description : Tetratricopeptide repeat

Number of Sequence in 50% Dataset : 1461

Number of Sequence in Full Dataset : 2156

Average sequence length: 66.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13371	B0CN22_STRLA_2_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13371	D0NXF1_PHYIT_304_362	98.0

Sequence based PCA Plot of the family - PF13371 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay