3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13370

Details:

PFam ID : PF13370

PFam Domain Description : 4Fe-4S single cluster domain

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 323

Average sequence length: 57.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13370	B0CN22_STRLA_2_48	93.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13370	D3SM09_THEAH_7_69	100

Sequence based PCA Plot of the family - PF13370 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=27
Motif2 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay