3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13368

Details:

PFam ID : PF13368

PFam Domain Description : Topoisomerase C-terminal repeat

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 1295

Average sequence length: 66.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13368	D8TJ44_VOLCA_1038_1117	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13368	F0RSY4_SPHGB_716_782	99.9

Sequence based PCA Plot of the family - PF13368 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay