3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13365

Details:

PFam ID : PF13365

PFam Domain Description : Trypsin-like peptidase domain

Number of Sequence in 50% Dataset : 805

Number of Sequence in Full Dataset : 4090

Average sequence length: 145.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13365	F2EJA3_HORVD_452_563	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13365	F0VAG6_NEOCA_3_201	99.9

Sequence based PCA Plot of the family - PF13365 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=94 Length=8
Motif2 Start=65 Length=8
Motif3 Start=175 Length=11
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay