3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13364

Details:

PFam ID : PF13364

PFam Domain Description : Beta-galactosidase jelly roll domain

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 265

Average sequence length: 110.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13364	F2EJA3_HORVD_452_563	51.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13364	B0W8M8_CULQU_484_593	99.6

Sequence based PCA Plot of the family - PF13364 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=69 Length=8
Motif3 Start=84 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay