3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13362

Details:

PFam ID : PF13362

PFam Domain Description : Toprim domain

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 446

Average sequence length: 98.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13362	D5BYG8_NITHN_208_344	70.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13362	Q5NX87_AROAE_241_333	97.7

Sequence based PCA Plot of the family - PF13362 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=17
Motif2 Start=43 Length=8
Motif3 Start=72 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay