3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13361

Details:

PFam ID : PF13361

PFam Domain Description : UvrD-like helicase C-terminal domain

Number of Sequence in 50% Dataset : 1557

Number of Sequence in Full Dataset : 5149

Average sequence length: 297.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13361	A1ZU89_9BACT_333_776	92.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13361	A2F0U7_TRIVA_255_443	100

Sequence based PCA Plot of the family - PF13361 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=17
Motif2 Start=520 Length=26
Motif3 Start=484 Length=29

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay