3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13359

Details:

PFam ID : PF13359

PFam Domain Description : DDE superfamily endonuclease

Number of Sequence in 50% Dataset : 379

Number of Sequence in Full Dataset : 1089

Average sequence length: 126.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13359	F2UCF2_9EUKA_113_300	63.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13359	A2DRL5_TRIVA_178_257	99.9

Sequence based PCA Plot of the family - PF13359 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=159 Length=8
Motif3 Start=71 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay