3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13358

Details:

PFam ID : PF13358

PFam Domain Description : DDE superfamily endonuclease

Number of Sequence in 50% Dataset : 434

Number of Sequence in Full Dataset : 1846

Average sequence length: 122.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13358	D3V757_XENBS_1_40	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13358	A7BRQ2_9GAMM_2_80	99.1

Sequence based PCA Plot of the family - PF13358 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=190 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay