3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13356

Details:

PFam ID : PF13356

PFam Domain Description : Domain of unknown function (DUF4102)

Number of Sequence in 50% Dataset : 274

Number of Sequence in Full Dataset : 1666

Average sequence length: 87.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13356	D3V757_XENBS_1_40	73.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13356	D9SDL4_GALCS_2_124	100

Sequence based PCA Plot of the family - PF13356 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=54 Length=8
Motif3 Start=2 Length=24

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay