3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13354

Details:

PFam ID : PF13354

PFam Domain Description : Beta-lactamase enzyme family

Number of Sequence in 50% Dataset : 347

Number of Sequence in Full Dataset : 1126

Average sequence length: 198.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13354	E6N7P3_9ARCH_148_285	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13354	D6KD09_9ACTO_1_112	100

Sequence based PCA Plot of the family - PF13354 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=275 Length=8
Motif3 Start=81 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay