3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13353

Details:

PFam ID : PF13353

PFam Domain Description : 4Fe-4S single cluster domain

Number of Sequence in 50% Dataset : 821

Number of Sequence in Full Dataset : 5124

Average sequence length: 131.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13353	E6N7P3_9ARCH_148_285	99.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13353	C2QMX5_BACCE_31_98	99.7

Sequence based PCA Plot of the family - PF13353 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=128 Length=8
Motif2 Start=107 Length=8
Motif3 Start=82 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay