3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13350

Details:

PFam ID : PF13350

PFam Domain Description : Tyrosine phosphatase family

Number of Sequence in 50% Dataset : 308

Number of Sequence in Full Dataset : 710

Average sequence length: 154.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13350	D3R281_CLOB3_5_182	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13350	E5AD83_LEPMC_118_208	100

Sequence based PCA Plot of the family - PF13350 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=17
Motif2 Start=195 Length=8
Motif3 Start=169 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay