3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13347

Details:

PFam ID : PF13347

PFam Domain Description : MFS/sugar transport protein

Number of Sequence in 50% Dataset : 678

Number of Sequence in Full Dataset : 1738

Average sequence length: 368.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13347	E8QAX6_STRED_1_68	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13347	C2GYI4_BIFLI_52_203	99.6

Sequence based PCA Plot of the family - PF13347 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=258 Length=8
Motif2 Start=2 Length=8
Motif3 Start=67 Length=8
Motif4 Start=489 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay