3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13346

Details:

PFam ID : PF13346

PFam Domain Description : ABC-2 family transporter protein

Number of Sequence in 50% Dataset : 265

Number of Sequence in Full Dataset : 430

Average sequence length: 198.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13346	E8QAX6_STRED_1_68	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13346	C0FQX0_9FIRM_3_105	99.7

Sequence based PCA Plot of the family - PF13346 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=119 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay