3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13344

Details:

PFam ID : PF13344

PFam Domain Description : Haloacid dehalogenase-like hydrolase

Number of Sequence in 50% Dataset : 208

Number of Sequence in Full Dataset : 1405

Average sequence length: 102.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13344	E8QAX6_STRED_1_68	95.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13344	F1PKZ7_CANFA_1_165	100

Sequence based PCA Plot of the family - PF13344 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=17
Motif2 Start=105 Length=8
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay