3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13343

Details:

PFam ID : PF13343

PFam Domain Description : Bacterial extracellular solute-binding protein

Number of Sequence in 50% Dataset : 358

Number of Sequence in Full Dataset : 1902

Average sequence length: 239.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13343	Q6T1G5_LEPPA_371_390	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13343	A3PBG2_PROM0_83_306	100

Sequence based PCA Plot of the family - PF13343 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=247 Length=8
Motif2 Start=106 Length=17
Motif3 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay