3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13342

Details:

PFam ID : PF13342

PFam Domain Description : C-terminal repeat of topoisomerase

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 335

Average sequence length: 62.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13342	Q6T1G5_LEPPA_371_390	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13342	C7GHN5_9FIRM_504_574	100

Sequence based PCA Plot of the family - PF13342 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=34 Length=11
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay