3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13339

Details:

PFam ID : PF13339

PFam Domain Description : Apoptosis antagonizing transcription factor

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 153

Average sequence length: 132.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13339	A0CVL6_PARTE_144_261	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13339	B3S5L1_TRIAD_204_391	100

Sequence based PCA Plot of the family - PF13339 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=4 Length=8
Motif3 Start=139 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay