3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13338

Details:

PFam ID : PF13338

PFam Domain Description : Domain of unknown function (DUF4095)

Number of Sequence in 50% Dataset : 469

Number of Sequence in Full Dataset : 1046

Average sequence length: 117.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13338	A8LGS9_FRASN_31_200	71.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13338	Q093J2_STIAD_41_129	99.8

Sequence based PCA Plot of the family - PF13338 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=132 Length=8
Motif3 Start=54 Length=8
Motif4 Start=14 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay