3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13336

Details:

PFam ID : PF13336

PFam Domain Description : Acetyl-CoA hydrolase/transferase C-terminal domain

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 668

Average sequence length: 149.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13336	Q9LDB7_ORYSJ_31_109	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13336	E5L9K3_BACOL_187_265	100

Sequence based PCA Plot of the family - PF13336 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=62 Length=8
Motif2 Start=1 Length=8
Motif3 Start=117 Length=8
Motif4 Start=140 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay