3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13335

Details:

PFam ID : PF13335

PFam Domain Description : Magnesium chelatase, subunit ChlI

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 1094

Average sequence length: 96.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13335	Q9LDB7_ORYSJ_31_109	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13335	A8R0M0_9SPIO_147_259	100

Sequence based PCA Plot of the family - PF13335 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=57 Length=8
Motif3 Start=36 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay