3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13333

Details:

PFam ID : PF13333

PFam Domain Description : Integrase core domain

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 479

Average sequence length: 51.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13333	Q6YPP4_ONYPE_14_72	36.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13333	Q1W0H8_9FLAO_28_73	100

Sequence based PCA Plot of the family - PF13333 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=34 Length=8
Motif3 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay