3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13332

Details:

PFam ID : PF13332

PFam Domain Description : Fimbrial adhesin F17-AG, lectin domain

Number of Sequence in 50% Dataset : 647

Number of Sequence in Full Dataset : 1704

Average sequence length: 121.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13332	C4S3F7_YERBE_883_926	76.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13332	D3UFL2_HELM1_1913_2002	97.2

Sequence based PCA Plot of the family - PF13332 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay