3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13331

Details:

PFam ID : PF13331

PFam Domain Description : Domain of unknown function (DUF4093)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 242

Average sequence length: 86.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13331	D8TN45_VOLCA_925_1017	48.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13331	D8TN45_VOLCA_925_1017	100

Sequence based PCA Plot of the family - PF13331 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=71 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay