3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13330

Details:

PFam ID : PF13330

PFam Domain Description : Mucin-2 protein WxxW repeating region

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 185

Average sequence length: 83.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13330	Q63349_RAT_2_50	92.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13330	E4Y9A5_OIKDI_160_208	96.7

Sequence based PCA Plot of the family - PF13330 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=68 Length=8
Motif2 Start=81 Length=11
Motif3 Start=2 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay