3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13328 Details: PFam ID : PF13328 PFam Domain Description : HD domain Number of Sequence in 50% Dataset : 194 Number of Sequence in Full Dataset : 1706 Average sequence length: 145.6 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF13328Q93FM4_CITRO_9_172No suitable BRS could be identified HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF13328D6TNK1_9CHLR_5_206100 Sequence based PCA Plot of the family - PF13328 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=19 Length=18Motif2 Start=10 Length=8Motif3 Start=1 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF13328
PFam Domain Description : HD domain
Number of Sequence in 50% Dataset : 194
Number of Sequence in Full Dataset : 1706
Average sequence length: 145.6
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER