3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13327

Details:

PFam ID : PF13327

PFam Domain Description : Type III secretion system subunit

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 24

Average sequence length: 155.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13327	Q93FM4_CITRO_9_172	63.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13327	E0IPZ2_9GAMM_29_197	100

Sequence based PCA Plot of the family - PF13327 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=1 Length=11
Motif3 Start=87 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay