3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13325

Details:

PFam ID : PF13325

PFam Domain Description : N-terminal region of micro-spherule protein

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 72

Average sequence length: 141.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13325	A4S855_OSTLU_8_87	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13325	A9V734_MONBE_479_676	100

Sequence based PCA Plot of the family - PF13325 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=114 Length=8
Motif3 Start=1 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay