3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13324

Details:

PFam ID : PF13324

PFam Domain Description : Grap2 and cyclin-D-interacting

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 106

Average sequence length: 216.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13324	Q5KDQ8_CRYNE_22_183	86.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13324	Q6FJ24_CANGA_47_334	100

Sequence based PCA Plot of the family - PF13324 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=255 Length=11
Motif4 Start=99 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay