3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13323

Details:

PFam ID : PF13323

PFam Domain Description : N-terminal domain with HPIH motif

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 60

Average sequence length: 146.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13323	Q6CWE9_KLULA_8_166	90.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13323	Q6CWE9_KLULA_8_166	100

Sequence based PCA Plot of the family - PF13323 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=155 Length=8
Motif3 Start=103 Length=11
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay