3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13320

Details:

PFam ID : PF13320

PFam Domain Description : Domain of unknown function (DUF4091)

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 112

Average sequence length: 70.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13320	C0CPX2_9FIRM_137_175	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13320	F0JCA1_DESDE_497_596	100

Sequence based PCA Plot of the family - PF13320 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=30 Length=8
Motif2 Start=5 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay