3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13312

Details:

PFam ID : PF13312

PFam Domain Description : Domain of unknown function (DUF4081)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 95

Average sequence length: 106.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13312	C5C9S5_MICLC_67_181	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13312	C5C9S5_MICLC_67_181	100

Sequence based PCA Plot of the family - PF13312 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=99 Length=8
Motif3 Start=18 Length=8
Motif4 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay