3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13310

Details:

PFam ID : PF13310

PFam Domain Description : Virulence protein RhuM family

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 459

Average sequence length: 178.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13310	F0CCN9_9XANT_50_142	64.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13310	A2STV6_METLZ_5_130	99.5

Sequence based PCA Plot of the family - PF13310 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay