3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13309

Details:

PFam ID : PF13309

PFam Domain Description : HTH domain

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 338

Average sequence length: 63.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13309	C3K385_PSEFS_140_203	21.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13309	E7NVB7_TREPH_102_169	100

Sequence based PCA Plot of the family - PF13309 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=52 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay