3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13308

Details:

PFam ID : PF13308

PFam Domain Description : YARHG domain

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 168

Average sequence length: 80.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13308	E6JU51_9SPIO_347_407	98.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13308	D6GR15_FILAD_210_314	100

Sequence based PCA Plot of the family - PF13308 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay