3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13307

Details:

PFam ID : PF13307

PFam Domain Description : Helicase C-terminal domain

Number of Sequence in 50% Dataset : 216

Number of Sequence in Full Dataset : 1522

Average sequence length: 165.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13307	A1T3I3_MYCVP_99_181	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13307	P72618_SYNY3_447_530	99.3

Sequence based PCA Plot of the family - PF13307 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=77 Length=8
Motif3 Start=17 Length=8
Motif4 Start=109 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay