3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13306

Details:

PFam ID : PF13306

PFam Domain Description : Leucine rich repeats (6 copies)

Number of Sequence in 50% Dataset : 4133

Number of Sequence in Full Dataset : 8424

Average sequence length: 113.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13306	A1T3I3_MYCVP_99_181	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13306	Q16EZ7_AEDAE_169_248	98.6

Sequence based PCA Plot of the family - PF13306 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=123 Length=14
Motif2 Start=93 Length=14
Motif3 Start=63 Length=14
Motif4 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay