3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13305

Details:

PFam ID : PF13305

PFam Domain Description : WHG domain

Number of Sequence in 50% Dataset : 401

Number of Sequence in Full Dataset : 932

Average sequence length: 85.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13305	A1T3I3_MYCVP_99_181	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13305	Q0VLB9_ALCBS_94_189	99.8

Sequence based PCA Plot of the family - PF13305 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay