3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13304

Details:

PFam ID : PF13304

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 2038

Number of Sequence in Full Dataset : 3781

Average sequence length: 221.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13304	C0CYH5_9CLOT_1_117	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13304	Q1CW77_MYXXD_360_427	99.9

Sequence based PCA Plot of the family - PF13304 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=20
Motif2 Start=257 Length=8
Motif3 Start=300 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay