3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13302

Details:

PFam ID : PF13302

PFam Domain Description : Acetyltransferase (GNAT) domain

Number of Sequence in 50% Dataset : 2003

Number of Sequence in Full Dataset : 7117

Average sequence length: 138.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13302	Q8ERZ9_OCEIH_4_123	91.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13302	C5C3Q5_BEUC1_5_123	99.7

Sequence based PCA Plot of the family - PF13302 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=95 Length=8
Motif3 Start=134 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay