3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13300

Details:

PFam ID : PF13300

PFam Domain Description : Domain of unknown function (DUF4078)

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 79

Average sequence length: 83.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13300	F2S7D3_TRITO_217_247	5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13300	A8P5X2_BRUMA_130_222	98.7

Sequence based PCA Plot of the family - PF13300 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=37 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay