3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13298

Details:

PFam ID : PF13298

PFam Domain Description : DNA polymerase Ligase (LigD)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 268

Average sequence length: 106.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13298	E8S5D8_MICSL_41_109	82.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13298	F0SIB6_PLABD_7_119	100

Sequence based PCA Plot of the family - PF13298 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay