3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13297

Details:

PFam ID : PF13297

PFam Domain Description : Telomere stability C-terminal

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 87

Average sequence length: 57.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13297	A9MMX2_SALAR_1_49	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13297	E4YF21_OIKDI_256_315	98.8

Sequence based PCA Plot of the family - PF13297 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay