3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13293

Details:

PFam ID : PF13293

PFam Domain Description : Domain of unknown function (DUF4074)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 25

Average sequence length: 60.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13293	A9DYL0_9FLAO_545_606	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13293	B8Y8Q9_LATME_330_389	100

Sequence based PCA Plot of the family - PF13293 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay