3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13292

Details:

PFam ID : PF13292

PFam Domain Description : 1-deoxy-D-xylulose-5-phosphate synthase

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 1247

Average sequence length: 233.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13292	A9DYL0_9FLAO_545_606	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13292	E2UF43_MYCTU_1_133	100

Sequence based PCA Plot of the family - PF13292 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=18
Motif2 Start=81 Length=8
Motif3 Start=55 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay