3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13291

Details:

PFam ID : PF13291

PFam Domain Description : ACT domain

Number of Sequence in 50% Dataset : 250

Number of Sequence in Full Dataset : 1265

Average sequence length: 78.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13291	A9DYL0_9FLAO_545_606	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13291	D6TNK2_9CHLR_681_764	100

Sequence based PCA Plot of the family - PF13291 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=18
Motif2 Start=52 Length=8
Motif3 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay