3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13290

Details:

PFam ID : PF13290

PFam Domain Description : Chitobiase/beta-hexosaminidase C-terminal domain

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 101

Average sequence length: 67.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13290	A9DYL0_9FLAO_545_606	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13290	C0EIC8_9CLOT_45_109	100

Sequence based PCA Plot of the family - PF13290 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=8
Motif2 Start=20 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay