3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13288

Details:

PFam ID : PF13288

PFam Domain Description : DXP reductoisomerase C-terminal domain

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 1087

Average sequence length: 119.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13288	Q4D9T2_TRYCR_396_476	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13288	C5F0E6_9HELI_242_368	100

Sequence based PCA Plot of the family - PF13288 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=20
Motif2 Start=71 Length=25

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay