3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13287

Details:

PFam ID : PF13287

PFam Domain Description : Fn3 associated

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 128

Average sequence length: 63.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13287	Q4D9T2_TRYCR_396_476	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13287	A6TJQ9_ALKMQ_200_311	100

Sequence based PCA Plot of the family - PF13287 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=42 Length=8
Motif2 Start=33 Length=8
Motif3 Start=15 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay